PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G416900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 370aa    MW: 40106.3 Da    PI: 4.9508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G416900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13175222355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Sevir.5G416900.1.p 175 KNHVMSERKRREKLNEMFLVLKSLVPSiH------KVDKASILAETIAYLKELQ 222
                         5799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.19172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-16175226No hitNo description
PfamPF000104.6E-11176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17176233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-18176240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQFPACSQEP SSSPSANETG KPADIIVFED LDHIAMEAMI AGGQELGEAE SLSDGSLEQI  60
TKEIDEFYSL CEEMDVQPLE DTWIMDGSFE VPSSQQPAPG PATTNAAATS SALVDGSRAT  120
SFTAWARPES DSNEVAVPVV EEPQKLLKKA VAGGAWAANN GGGGTTRMAQ ESGVKNHVMS  180
ERKRREKLNE MFLVLKSLVP SIHKVDKASI LAETIAYLKE LQRRVQELES SREPIISRPS  240
ETTRATRRHD DEAVRKKVCA AGSKRKGSEL GGDVEREHHP RALSKDSTSN VTVTVSDKEV  300
LVEVQCRWEE LLMTRVFDAI KSLQLDVLSV QASAPDGFMG LKIRAQFAGS AAVVPWMISE  360
ALRKAIGKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G416900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970877.10.0anthocyanin regulatory R-S protein
SwissprotP135261e-144ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A368REN90.0A0A368REN9_SETIT; Uncharacterized protein
TrEMBLK3XG260.0K3XG26_SETIT; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.36e-40bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]