PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G427700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 260aa    MW: 27840.6 Da    PI: 4.6562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G427700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039234257123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         + C+ C+k+F +   L++H +  H
  Sevir.5G427700.2.p 234 HACKSCSKTFGSDKALESHKKAkH 257
                         67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.512234259IPR007087Zinc finger, C2H2
PfamPF139121.1E-5234258IPR007087Zinc finger, C2H2
PROSITE patternPS000280236257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFWGEEVKP GAKVSCRADE GYVIHLSQAA LGETKKGSEN VVVSIQVDDK KLVLGTLSVD  60
KHPQIMCDLI FEDDFEISHS SKTASVFLCG YKSPIPIFEP DSGDDEISSD EELETEDIPI  120
KNDEINDSEM SEDSDEETSS GADLTGDSED ETDDSEEQTP TPKKPEVVGK KRATEAVASS  180
GKKAKVEPSG DKKGVHVSTP HPAKQASKTP AEKSGKTPAT DKKSKDKSPK SGSHACKSCS  240
KTFGSDKALE SHKKAKHEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G427700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970994.11e-165histone deacetylase HDT2 isoform X2
TrEMBLA0A368REV51e-164A0A368REV5_SETIT; Uncharacterized protein
STRINGSi004270m1e-153(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-28histone deacetylase 3