PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G441400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 255aa    MW: 26874 Da    PI: 8.0265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G441400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1141.6e-35231541128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeek.ewyfFskrdkky.atgkrknratksgyWkatg 87 
                         lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++d+ +++PwdL p +++ ++ + e +fF+  +++  ++g  + ra+ +g W+ +g
  Sevir.5G441400.1.p  23 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLARLHPWDLlPpAAAGGDADgERFFFHLPATRCwRKGGGAARAAGTGLWRPSG 112
                         699***************************.99**************64344333333477888876665515799*************** PP

                 NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+k v+s   ++ vg+k+tLvfy+gr + + +tdW mheyrl
  Sevir.5G441400.1.p 113 KEKLVVSPrCKRPVGTKRTLVFYRGRGRAAARTDWAMHEYRL 154
                         ******9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4619192IPR003441NAC domain
PROSITE profilePS5100544.78523193IPR003441NAC domain
PfamPF023654.7E-2124154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEGRPAGAWR VQGPAGAPVA AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGIIPDADL  60
ARLHPWDLLP PAAAGGDADG ERFFFHLPAT RCWRKGGGAA RAAGTGLWRP SGKEKLVVSP  120
RCKRPVGTKR TLVFYRGRGR AAARTDWAMH EYRLLPSGLH PFHGCAAAGN APTAHVSCHG  180
AAADWVVCRI FKRTKPAAHR GQEDDDAEEP SSPSSASSCV TDTSEAGDQE QDGDDEESSS  240
SSSNGGSSCS VASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-282319717169NO APICAL MERISTEM PROTEIN
1ut4_B2e-282319717169NO APICAL MERISTEM PROTEIN
1ut7_A2e-282319717169NO APICAL MERISTEM PROTEIN
1ut7_B2e-282319717169NO APICAL MERISTEM PROTEIN
4dul_A2e-282319717169NAC domain-containing protein 19
4dul_B2e-282319717169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G441400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-124EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971124.10.0NAC domain-containing protein 83-like isoform X1
TrEMBLA0A368RFD30.0A0A368RFD3_SETIT; Uncharacterized protein
STRINGPavir.Eb03721.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-29NAC domain containing protein 2