PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G449500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 429aa    MW: 45515.7 Da    PI: 8.79
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G449500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-051436123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Sevir.5G449500.2.p 14 FVCEICHKGFQRDQNLQLHRRGH 36
                        89*******************88 PP
2zf-C2H212.70.0003899121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ Cgk++  +s+ k H +++
  Sevir.5G449500.2.p  99 WKCERCGKRYAVHSDWKAHAKVC 121
                         58*****************9987 PP
3zf-C2H212.60.00041129147523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++++H   +
  Sevir.5G449500.2.p 129 DCGTVFSRRDSFVTHRAFC 147
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-51336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-71336No hitNo description
SMARTSM003550.0461436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6371436IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SMARTSM003551906494IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-587119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-794119No hitNo description
SMARTSM0035515099119IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MALSPRTLMA TNRFVCEICH KGFQRDQNLQ LHRRGHNLPW KLRQRGGGDG AAAGGGGPPR  60
KRVYVCPEAS CVHHNPARAL GDLTGIKKHY CRKHGEKKWK CERCGKRYAV HSDWKAHAKV  120
CGTREYKCDC GTVFSRRDSF VTHRAFCDAL AQENNKLAQP MNMATVASAL QGHAHHLALP  180
PSHADDLDAA AEDDADADFN LDTKSPQLRL QPTTMSDAAN TPFLPPPLSM AGCMLSSLAA  240
ARPAPSPSTT FFSGAKIGID GPSGPTGTMG FSPAGSASMS ATALLQKAAE MGATTSGGYG  300
AGFPTTVGFG PMLGGPDRFP SPFGPLKAAM EPPYDGQPLL GQTQLVGLDV GRLLLPMPPG  360
QQLYGGHGGG VGSMTRAIGS LMHGGQQQQQ MVEHRRPDDL RVVDYLGVDE QRSFSGVSSF  420
GPHIGPWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-3495162370Zinc finger protein JACKDAW
5b3h_F9e-3495162370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G449500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971187.30.0protein indeterminate-domain 2
SwissprotQ9SCQ62e-96IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A368RFM80.0A0A368RFM8_SETIT; Uncharacterized protein
STRINGSi001316m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-91indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]