PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G476600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 203aa    MW: 22427.4 Da    PI: 9.8495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G476600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.22.9e-203165135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Sevir.5G476600.1.p 31 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 65
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-202575IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.2312561IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-142565No hitNo description
Gene3DG3DSA:3.30.50.101.6E-162566IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.18E-153066No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003204.7E-183165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGLEMEVEVE VETDPNTSPD EATASGEPKA CADCHTTKTP LWRGGPEGPK SLCNACGIRY  60
RKRRRQALSL DAAQQHDQQP SKKAAADPQQ DDQQPQPKKK PAADSQEDQQ PQQKKKPAAD  120
SQEDQQLQPK KPAAAASSTT TNKKDKKKKK DRQVTVELRV VGFGKEVMLK QRRQMRRKKC  180
MSEEERAAVL LMAMSSGVIY AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064RKRRR
294100PQPKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G476600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989132e-43FP098913.1 Phyllostachys edulis cDNA clone: bphyst028n16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971450.11e-143GATA transcription factor 17
TrEMBLA0A368RGR81e-141A0A368RGR8_SETIT; Uncharacterized protein
STRINGSi002983m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-19GATA transcription factor 15