PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G007500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 328aa    MW: 35790.8 Da    PI: 7.0441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G007500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09188228954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Sevir.6G007500.1.p 188 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 228
                         699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-14185238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7189228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-7202233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPNPAPPPP PPLPFHLVST SSHHHGHHPP  60
PHPPHHHHHL GLDPSPSSSL FPPHHHRLHH HLGLDIDPSS HHRHHHEYEQ QEPGGHEQQE  120
EMRQHEAGVA QEERGGAGVE DVEEELGAMK EMMYRIAAMQ PVDIDPATIK KPRRRNVRIS  180
EDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELQHQPP  240
TPTQQQYPAA AAAGAGAGPS TSVVGPRPGG PPFLPLGPGQ LIDWAGFVRP VDIHGPTSSS  300
SSSSMGGAHA ALGFGFSSAG QSSHGMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G007500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-171BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-171EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972449.10.0transcription factor HEC1
TrEMBLK3YLS30.0K3YLS3_SETIT; Uncharacterized protein
STRINGSi015197m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.16e-37bHLH family protein