PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G022500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 208aa    MW: 21275.9 Da    PI: 9.8831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G022500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-193080256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+e+Aa+a++ a++kl+g+
  Sevir.6G022500.1.p 30 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDTAARKLRGP 80
                        679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-262986No hitNo description
PfamPF008471.4E-132979IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-213087IPR016177DNA-binding domain
PROSITE profilePS5103223.2223087IPR001471AP2/ERF domain
SMARTSM003801.9E-313093IPR001471AP2/ERF domain
PRINTSPR003671.1E-93142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-293287IPR001471AP2/ERF domain
PRINTSPR003671.1E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAPKSSSTSP AGSSSSSGSG SGQHAQQQPR LRGVRKRPWG RYAAEIRDPA RKARVWLGTF  60
DTPEQAARAY DTAARKLRGP GATTNYPAPP AAAPAASASR GTVDDDDSSS SSSSMENSPS  120
AAAAAAAAPA PLSSLDLRLG LPAAMVAAQP YLFLEPAPTV PAVPALRQFL PLKSEEELSS  180
CSRPRPSSVL VGLGLDLNLA PPAEMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2027871172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G022500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937231e-78AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
GenBankEU9490131e-78EU949013.1 Zea mays clone 393795 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.11e-50ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1E5V4M17e-52A0A1E5V4M1_9POAL; Uncharacterized protein
STRINGPavir.Fa01794.1.p4e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9