PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G022600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 204aa    MW: 20446 Da    PI: 9.6301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G022600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-202575256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e+Aa+a++aa++kl+g+
  Sevir.6G022600.1.p 25 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAALKLRGP 75
                        679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-142474IPR001471AP2/ERF domain
CDDcd000187.72E-192481No hitNo description
PROSITE profilePS5103223.672582IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-212583IPR016177DNA-binding domain
SMARTSM003801.7E-302588IPR001471AP2/ERF domain
PRINTSPR003671.1E-92637IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-292783IPR001471AP2/ERF domain
PRINTSPR003671.1E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAPKRSTSPA GSSSSGSGSG AEQPRLRGVR KRPWGRYAAE IRDPVRKARV WLGTFDTPEQ  60
AARAYDAAAL KLRGPGATTN YPAADAKAAA APATSGSGSG SIVLSEGASS SSSSSRDSPL  120
APSLALPATA AAQPCHLFLD PTTTTVVVVA PALLQFLPPK SEEEHSFAGS SSSPPVVFDS  180
APPAVGLGLD LNLALPAPGT MVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231382272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G022600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4937232e-74AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene).
GenBankEU9701532e-74EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankEU9753882e-74EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankKJ7277062e-74KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972568.11e-138ethylene-responsive transcription factor 11
TrEMBLK3YJQ51e-137K3YJQ5_SETIT; Uncharacterized protein
STRINGSi014474m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.15e-22ERF domain protein 11