PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G039800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 418aa    MW: 42771.2 Da    PI: 7.4717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G039800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-053103471254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Sevir.6G039800.1.p 310 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 347
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-5308351No hitNo description
Gene3DG3DSA:4.10.280.104.5E-9308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-11308368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MADHQEMIHP AAAAATGGST GHGHGGGDWW STAVSCSPDQ LPGFGAGWSA AAADGGSRSR  60
SGNAAASAES PGSNSLATGG SSITYQEPAA GVADPGAVAV PQPAAGLAAG WNQPYYLDGS  120
GFHGYMSSSR GDHQGHLGPR SPSSNNNGLM LQDPTHDPNH QFLSNLGLEL LSSPTSPAGG  180
FRSSSLLRTL TEPSAAVAKP SSLGLFQQYH QQQTVNQAPS SIREALQFTN NTPFWNPSTS  240
FAAAAEGAAS LGTAGPPSGQ SRPANLAAKS APEGAGDSGS IIAKKANTDP TPLKKARTGT  300
PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGSLSAPYLK  360
NRQQVPHLKI SRDGGEAAAA KGDLTGRGLC LVPISSTFAV ASETPVDFWS PFGAAFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G039800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972712.10.0transcription factor bHLH112
TrEMBLA0A368RHX50.0A0A368RHX5_SETIT; Uncharacterized protein
STRINGSi013853m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-43bHLH family protein