PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G053000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 243aa    MW: 26423.2 Da    PI: 5.1464
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G053000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.11.2e-2657143187
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvltpsdv+k++rlv+pk++ae++      +++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+  +L +gD+v F+++  
  Sevir.6G053000.1.p  57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGVPWRFRYSYWGSSQSYVMTKGWSRFVRGARLAAGDTVSFSRVAA 143
                         89************************555567789***********************************************97755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-3748158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2854157IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-2555145No hitNo description
PROSITE profilePS5086313.28157157IPR003340B3 DNA binding domain
PfamPF023627.3E-2457146IPR003340B3 DNA binding domain
SMARTSM010193.5E-1957154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MYMDLSLGTL VEDTQEVQEE HQEEEQEDDL YQQRALGQDL QHGGGEPSHA TEREHMFDKV  60
LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFEDRGGV PWRFRYSYWG SSQSYVMTKG  120
WSRFVRGARL AAGDTVSFSR VAAGGGSRYF IDYRHCQRRR HDISFGDAAA MPAAWPIVTR  180
RGAATVAVDT APVPVAGHGI EVGPTAGARS FRLFGFNVEC SGDDGAAASA ASAELEYVDG  240
DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-45521543111B3 domain-containing transcription factor NGA1
5os9_B4e-45521543111B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G053000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284101e-108KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974419.11e-176putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD56e-75Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLK3YJE31e-175K3YJE3_SETIT; Uncharacterized protein
STRINGSi014362m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.13e-45B3 family protein