PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G090000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 258aa MW: 27887.4 Da PI: 7.7623

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G090000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.8	1.2e-15	20	80	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ Sevir.6G090000.1.p 20 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 80 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.8	5.5e-34	19	81	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ Sevir.6G090000.1.p 19 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 81 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-9	15	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.321	16	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-13	17	87	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-5	18	85	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-13	20	80	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDSHHGQAHR SSEGEPTMAR SRWAPKPEQI LILESIFNSG MVNPAKDETA RIRRLLERFG 60 AVRDANVFYW FQNRRSRSRR RARQLQQACS ATAHQLPAAG VGAGHYHGVN DNASPFGMNG 120 HSQVRAGMMP AAAPLPSVAA TAPHFFAEEV DSGDDLFAIS RQMGLMSRGG DHRCGYTASD 180 ASQMTYQPTG MTSIQVFING AVYEVPGAGA PLDLAGTFGH DAMLVHSSGE ILPVNEHGVL 240 MKSLQMGECY YLVSRST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G090000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	1e-106	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	1e-106	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-106	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683622.1	0.0	WUSCHEL-related homeobox 10
Swissprot	A2YST1	2e-98	WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBL	A0A368RJS1	0.0	A0A368RJS1_SETIT; Uncharacterized protein
STRING	Si015065m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	9e-30	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Sevir.6G090000.1.p