PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G115600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 280aa MW: 28940.3 Da PI: 8.1164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G115600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Sevir.6G115600.1.p 98 FKCNYCQRKFYTSQALGGHQNAH 120 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.16E-7	95	125	No hit	No description
PROSITE profile	PS50157	11.572	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDKGSSSRTA SMEVEGTGLQ VVEEGEEVQV PEKEDEAPAK ELDLLGALGS EVPAPEMKVV 60 EAQAVAPGKG KEKAVVAEEE KAPATAMAST GGEKKRSFKC NYCQRKFYTS QALGGHQNAH 120 KRERSLAKRG AAAAGRGLYG GADPFLPPHH LRFPHAWPYP AGGGRLSSSF VGLGRGSAAA 180 APFYGGVHHG WAAHAQPSMA GLARHAGAER PVYAPHGYGY SASSRAPSPA VLDSGMAGLR 240 WAGVANGASA GGDNGVAREA TTSQQEEAQS CKIDLNLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G115600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683031.1	0.0	zinc finger protein 3-like
TrEMBL	K3YL48	0.0	K3YL48_SETIT; Uncharacterized protein
STRING	Si014969m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13064	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-14	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Sevir.6G115600.1.p