PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G128100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 168aa MW: 19421.4 Da PI: 9.4928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G128100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 f+n+YA + F+v +++ +++ k+n+ei + +++C+++gk+ ++k+ e++++ + +t+C+ ++vk++ +g w++ kl+l+HnHel Sevir.6G128100.1.p 12 FFNFYAFLAVFQVPITHVSRTthkKQNNEIFRVEMKCKCHGKPPKKKTI--GEEEEEIQVKTNCQVVMVVKEN-KGIWKIGKLDLDHNHEL 99 9**********999887777779999**********9998876..899999**********99.**************9 PP FAR1 90 a 90 Sevir.6G128100.1.p 100 W 100 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-17	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MECKDKDDAH HFFNFYAFLA VFQVPITHVS RTTHKKQNNE IFRVEMKCKC HGKPPKKKTI 60 GEEEEEIQVK TNCQVVMVVK ENKGIWKIGK LDLDHNHELW PQSRNQLFSG HKYMTDMEKA 120 MIRTLNDNNI PTGKMISILS YLRGGLTALQ QQQQQQQHSL SILSKLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G128100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303846.1	5e-67	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6QAT4	4e-75	A0A3L6QAT4_PANMI; Uncharacterized protein
STRING	Pavir.Fb01661.1.p	1e-66	(Panicum virgatum)
STRING	Sb09g021205.1	7e-68	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9

Link Out ? help Back to Top
Phytozome	Sevir.6G128100.1.p