PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G130300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 263aa MW: 28309.3 Da PI: 10.1592

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G130300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.4e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Sevir.6G130300.1.p 47 KPRLRWTADLHDRFVDAVSQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-31	44	102	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.976	44	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.3E-24	47	102	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.96E-17	47	102	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-8	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-21	142	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MFPGLIHHAG RGGRPDAAGA EDSPRGGGLG LHGHGGGPSV VLTADPKPRL RWTADLHDRF 60 VDAVSQLGGP DKATPKAIMR TMGVKGLTLF HLKSHLQKYR LGRQSGKELT EQSKDASYLM 120 EAQSGTNSSP RGSTPDVKES QELKEALRAQ MEVQRRLHEQ VEVQKHMQIR MEANQKYIDA 180 ILDKAFKIVS EQLSGISISD RDLPDLASAG VMFSPADPLS PSVFHQLSVS AVSLLSPGGG 240 KALPHVAIDI SQKPPELKRK SR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G130300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967839	0.0	EU967839.1 Zea mays clone 306497 myb family transcription factor-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973254.1	0.0	protein PHR1-LIKE 2
Swissprot	Q8LAJ7	2e-70	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A368RKZ8	0.0	A0A368RKZ8_SETIT; Uncharacterized protein
STRING	Pavir.Fb00789.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G130300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]