PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G135100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 195aa    MW: 21004.3 Da    PI: 5.5689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G135100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-13753252
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                        +y+GV+  ++ grW+Ae r       + r+++g+f t+eeA++a++a  ++
  Sevir.6G135100.1.p  7 RYRGVY-ERQPGRWAAEFRSH---RLKVRHWVGTFATEEEAKAAYDAIERE 53
                        7****8.777*******5553...245*******************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9750IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-14754IPR001471AP2/ERF domain
PROSITE profilePS5103214.091765IPR001471AP2/ERF domain
SMARTSM003801.3E-4771IPR001471AP2/ERF domain
CDDcd000186.13E-13749No hitNo description
SuperFamilySSF541717.85E-12755IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSAPTRRYRG VYERQPGRWA AEFRSHRLKV RHWVGTFATE EEAKAAYDAI EREFISSPRC  60
GRQQPASERA GNGGGVRRAS HPPPDDNRQI VLALTTATTR MLLPPAGATT VSVSVPSAPC  120
VSSSTSASPP TPFQDAQLHD DAPPSVHSFW ADEPADEDLV GLADLAHLPL PLPFSGANMD  180
FDPADLSLFD NGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G135100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974648.11e-141dehydration-responsive element-binding protein 1E
TrEMBLK3YM521e-139K3YM52_SETIT; Uncharacterized protein
STRINGSi015330m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-10related to AP2 4