PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G143600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 432aa    MW: 45704.2 Da    PI: 4.5379
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G143600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-3883181199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e   dam +l+y++++ra dPv G++++il+l++qle + 
  Sevir.6G143600.1.p  83 ACAACKYQRRKCNQDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPELCADAMGTLIYQSDMRATDPVGGCYRLILSLERQLEIET 173
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         ael+++ +
  Sevir.6G143600.1.p 174 AELSAVLH 181
                         **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99982183IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3683179IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MTSSAVPAAA ASSHQQAPRL HITTTTTGTG TSTITTSPSS HHHHSPSSAR SAPHSASSSP  60
RGSSSNSGTA AGGGGGSGST NQACAACKYQ RRKCNQDCPL APYFPADQQR RFLNAHRLFG  120
VSNILKTLKR LRPELCADAM GTLIYQSDMR ATDPVGGCYR LILSLERQLE IETAELSAVL  180
HNLTLYRQAA AAAAAAAIPP QEAGGAMAAD LDVTSSNQPL LLDAEQEVVD ALYANHEADT  240
AAILQTDGVH RHDHGDESPQ DHGEQQQQQQ QLFDYFYYEA TASDDASSKP AIDINLDNMQ  300
QFDFDDTCAA EKIDLAPAGP EEMGQPQHLD VNCQIDHKDY QIKAAALVDA FDMRQELQPA  360
VDVNADVVVK AVDVNAGIGG VGIKAVDVNA NVDVNVDLQE EDPNNIAAGD EAVQMAAESS  420
HCRLGLGFSS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-228419912127LOB family transfactor Ramosa2.1
5ly0_B9e-228419912127LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G143600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973381.10.0uncharacterized protein LOC101782058
TrEMBLK3YNE20.0K3YNE2_SETIT; Uncharacterized protein
STRINGSi015783m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-37LOB domain-containing protein 22