PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G166800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 258aa    MW: 26945.8 Da    PI: 8.7621
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G166800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.38e-334599558
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                        +Y+eClkNhAaslGgha+DGCgEfmp+++++ +++a+l+CaACgCHRnFHRr +e
  Sevir.6G166800.1.p 45 VYRECLKNHAASLGGHALDGCGEFMPTPEADpADPASLRCAACGCHRNFHRRLPE 99
                        7*****************************99********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.9E-284597IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-224696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.8584697IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.0E-304696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-8208248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEAVVNVKYR PAMFLNGAAG AAAVAKKMRP AAAAAAAWGA GEAGVYRECL KNHAASLGGH  60
ALDGCGEFMP TPEADPADPA SLRCAACGCH RNFHRRLPEA PPSPPLLALP PPLPPAQPAP  120
ALQHVMREAP EDRLPAAFDD DETDESDEGS DFDEDRPLSP LPAPAMGPPG YLQPAPHMLL  180
ALSTGAPGAS IPAVVPRPPA SLGPMPAPGA ASAAARKRFR TKFSPEQKQR MQALSERLGR  240
RQRRRAAAPR NPPSQKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G166800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056362e-49AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149652e-49AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-49CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973533.11e-110zinc-finger homeodomain protein 10
SwissprotQ6ER213e-46ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLK3YID01e-108K3YID0_SETIT; Uncharacterized protein
STRINGSi013999m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-27zinc finger homeodomain 1