PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G184600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 504aa    MW: 54917.6 Da    PI: 10.9605
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G184600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57389.73.4e-28249346297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         ++ r+ws eDei++  +l++++ak+g+   + +d+ ++++++++++ +++s++ql++K+rrLK+K+k   ++a++g++p++ ++h+++++e
  Sevir.6G184600.1.p 249 RPPRVWSPEDEITIXSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 339
                         578************************777888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         lskk+Wg
  Sevir.6G184600.1.p 340 LSKKVWG 346
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-27251346IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAPKRPAAAA DAAAGSGSDA SDGGAGDVRY SRRRRRRNSP SPIPSRSPSR SRSRSRSKTP  60
PPNLRPNAAA LSSTPTSAGA DFAAASDSDA DAGGGRGRVS SPRRRDRKGA PRDRLDSDAX  120
ADASAGGRAP SPRRRRKRSP SFHSDSDADA GGRVPSPRRN RERTPRLHSD SDSDNSAAAA  180
GSEDEGAGAG DASSLPRARR SSRIETSNIK PVSTRPMEAP RRAPAGSSQR RSKRRHSSPG  240
RASPEHQKRP PRVWSPEDEI TIXSALVEYR AKKGQLPASI QDTGKVHSQI SGQLTANAST  300
TQLSDKVRRL KHKYKLLFTR ARNGRDPDLP TQHERDVYEL SKKVWGFKSG DILGGSHAYE  360
DTGDAESNEE QEIEESDDAM ENGWEHHERP GKKPKAFRFE NGNGNALAAV GRASHGNGSG  420
XDDAEKGKQM YPYLWEAVAE LSKEHPRGPI FRKAFGVLEK SKAQAMEEKL RKFRMSEIRQ  480
QLHRMDLMKX TMRMVLDALE GSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836RYSRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G184600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702606.10.0STOREKEEPER protein
TrEMBLK3YH800.0K3YH80_SETIT; Uncharacterized protein
STRINGSi013598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.16e-13DNA-binding storekeeper protein-related transcriptional regulator