PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G186300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 241aa    MW: 25964.3 Da    PI: 7.8851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G186300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08161201954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sevir.6G186300.1.p 161 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 201
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14157213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6161201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-6175206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHGAMMMVPS TPPSPPCMQQ APHHHFSTVP  60
HHMSTGGGAN GGRATYHDDH QYSTVTARSE SYVARDVYPA GGGGDNGGDQ GGATAAVGSS  120
AMREMIFRVA ALQPVNIDPE MVRPPKRRNV RISTDPQSVA ARMRRERISE RIRILQRLVP  180
GGTKMDTASM LDEAIHYVKF LKTQVQSLER AAAASGRRPA APPADDGGAA PYPGRVNGQW  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RPPKRR
2161166RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G186300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-155KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683432.11e-178transcription factor HEC1
TrEMBLK3YM701e-176K3YM70_SETIT; Uncharacterized protein
STRINGSi015349m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-38bHLH family protein