PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G190700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 245aa    MW: 26312.7 Da    PI: 9.0749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G190700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-132773354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  Sevir.6G190700.1.p 27 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 73
                        79*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-141777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-122274No hitNo description
Gene3DG3DSA:4.10.280.101.1E-142376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1962473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-112773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-123079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVVVMTEDGE EERPAPAPAS RKKERGRSHS EAERKRRQRI NAHLATLRTL VPSASRMDKA  60
ALLGEVVRHV RELRGKASDA AKGVGAGVIP GEGDEVGVEE DDRWRPAGRH YGGVGGLGTD  120
ADDACDRRLR PPRRVRAWVC CADRPGLMTD LGRAVRSVGN ARPVRAEIAT VGGRTRGVLE  180
LDVCCDDGDG DVVAAAATDR GNRAVAMSTL RTALRAVLLD REEHLSAAEG YKRPRFSAQI  240
AEVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12036RKKERGRSHSEAERKRR
23237ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G190700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279684e-51KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683575.11e-170transcription factor bHLH30
TrEMBLK3YJD71e-168K3YJD7_SETIT; Uncharacterized protein
STRINGSi014356m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-17bHLH family protein