PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G193000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 379aa    MW: 39694.9 Da    PI: 4.8062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G193000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14140191155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k+L+
  Sevir.6G193000.1.p 140 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKELE 191
                         79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.57E-15138195No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-17139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MALEAVVFCE GLFGSWAMAA APGGGGGWSW GHDGNEHGGA MEGMMDLEGG TAAAYWEVGA  60
SSSVMMKGPD QEPDGSSAAP PPPENGCGGG NAAAAGAGFS QEVLTVATTA TVMSPPSAAA  120
GRRKRRRTRS VKNMEEVESQ RMTHIAVERN RRKQMNEYLA VLRSLMPASY VQRGDQASII  180
GGAINYVKEL EQLLQSLEAR KHARRHDPSP GSGAGDAAPA PFAGFFTFPQ YSMSAGARSP  240
AATADTPPAD DEQSPNNADA DGNNGGDDDD ASGSRPSSVA EVEVTMVESH ANLKLLSRRR  300
PRQLLRLVAG LQGHRLSVLH LNATSDDARH MALYSLSLKV EDDCALSSVD DIAAAVHRIV  360
EAIDQEEGGA ELRSQAEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126RKRRR
2122127RKRRRT
3140151RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G193000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973718.10.0transcription factor bHLH94
TrEMBLK3YI560.0K3YI56_SETIT; Uncharacterized protein
STRINGSi013925m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-49bHLH family protein