PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G194200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 281aa    MW: 29637.8 Da    PI: 4.5862
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G194200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1955108356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++++q+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Sevir.6G194200.1.p  55 KKRRLSTDQVRALERSFETENKLEPERKARLAQDLGLQPRQVAVWFQNRRARWK 108
                         45689************************************************9 PP
2HD-ZIP_I/II134.63.5e-4354146193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls++qv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+
  Sevir.6G194200.1.p  54 EKKRRLSTDQVRALERSFETENKLEPERKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLIAEI 144
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ke
  Sevir.6G194200.1.p 145 KE 146
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1944112IPR009057Homeodomain-like
SMARTSM003891.3E-1853114IPR001356Homeobox domain
PROSITE profilePS5007117.18454110IPR001356Homeobox domain
CDDcd000867.34E-1855111No hitNo description
PfamPF000461.1E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-2057117IPR009057Homeodomain-like
PRINTSPR000318.6E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000318.6E-690106IPR000047Helix-turn-helix motif
PfamPF021836.6E-18110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKRPSGAVSG GGGGSPGLLP IVQSDDGFGG VGVEEADEDM VLCSGGVGAC GGGEKKRRLS  60
TDQVRALERS FETENKLEPE RKARLAQDLG LQPRQVAVWF QNRRARWKTK QLERDYAALR  120
HSYDALRADH DALRRDKDTL IAEIKELKAK LGDEDAAASF SSVKEEPAAS DVEPPAAAAA  180
MAAQGSSDSD SSGVVNDAEM APEKAHPPAA AAGAEAVVPC GVASSLALHH GEVFFHGHLL  240
KVEDDEAAFL GDDDAACGGF FADLQPPSLP WWTEPTEHWA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985ERKARLA
2102110RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G194200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973728.11e-151homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-117HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-117HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLK3YJ121e-150K3YJ12_SETIT; Uncharacterized protein
STRINGSi014231m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.15e-47homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]