PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G195300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 333aa    MW: 36805.8 Da    PI: 5.1402
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G195300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.8e-1828114286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         W++ e+l+Li+a+ e++++l+rg+lk+++Weev++             ++r + +qC++k+e+l+kry+ ++++         s + +f++
  Sevir.6G195300.1.p  28 WSDPETLHLIDAYDERWTALGRGQLKAQQWEEVAADTaarcaatPGLAVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRR 112
                         ***********************************999999976555666659*****************9998875......58999999 PP

            trihelix  85 le 86 
                         ++
  Sevir.6G195300.1.p 113 MD 114
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1726116No hitNo description
SMARTSM005951.2E-435121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMAAGAHEDS DEPPRRSALK KSAPAQPWSD PETLHLIDAY DERWTALGRG QLKAQQWEEV  60
AADTAARCAA TPGLAVQRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP  120
NAASSAYPAA GGSPPAAASD EEEEEEEDEE ENQEDEEEEE EELIPRNNNT RSINGIIREF  180
GSGLAPRHPQ LQLQQQQPPP PPPSITPSTA PPRKRVAYEA FQAKAAAAAA AAVAADKAKE  240
EEVELVRRRP SGPGGASAQL SAVLRDFSDG VMRLERRRME MQWEIERGWQ ETEARHAQML  300
QDAQRQLRDA IAAACSLPPK KARRDYGSSG DS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G195300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404531e-112BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds.
GenBankEU9543251e-112EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds.
GenBankKJ7278531e-112KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.11e-176uncharacterized protein LOC112896572
TrEMBLA0A2T7D8N01e-175A0A2T7D8N0_9POAL; Uncharacterized protein
STRINGSi014062m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-21Trihelix family protein