PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G202100.9.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 273aa    MW: 30783 Da    PI: 8.4815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G202100.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.11e-271058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        rien++nrqvtfskRrng+ KKA+ELSvLCd++va+++fs++g+l  +s
  Sevir.6G202100.9.p 10 RIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                        8********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.352161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-30284IPR002100Transcription factor, MADS-box
CDDcd002654.02E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRVKLPIRR IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
NGVEDVILRY MNLSEHDRGC AVQNREYLVS MLQRLKREGD MATQLANPGA LSERIKEIQR  120
EIYSSQQQLH ISEERLRLFE PDPAAFSSTS ELDGCEKLLA DLLDRVVQRK NYLLGEHMTP  180
FDPTASGMEG TNGAQMFTDQ QAAEGMGTFA GDAALWAAAD VGSDDPGHQM FGGSDPLIYL  240
RYVHDLLPRQ HRAARRRQCK HARHRKLFFL SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-18175174MEF2 CHIMERA
6byy_B6e-18175174MEF2 CHIMERA
6byy_C6e-18175174MEF2 CHIMERA
6byy_D6e-18175174MEF2 CHIMERA
6bz1_A8e-18175174MEF2 CHIMERA
6bz1_B8e-18175174MEF2 CHIMERA
6bz1_C8e-18175174MEF2 CHIMERA
6bz1_D8e-18175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G202100.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973792.11e-176agamous-like MADS-box protein AGL66 isoform X2
RefseqXP_004973793.11e-176agamous-like MADS-box protein AGL66 isoform X4
SwissprotQ1PFC25e-68AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLK3YIB61e-166K3YIB6_SETIT; Uncharacterized protein
STRINGSi013985m1e-167(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-70AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]