PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G204100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YC

Protein Properties

Length: 208aa MW: 22102.2 Da PI: 5.9297

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G204100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.8	3.2e-53	68	171	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql+ fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++ Sevir.6G204100.1.p 68 QLQIFWNEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEV 158 89****99999************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivprde Sevir.6G204100.1.p 159 FDFLVDIVPRDEA 171 *********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-30	73	162	IPR009072	Histone-fold
Pfam	PF00808	2.1E-21	90	153	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-36	91	168	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEPKSTTPPP VMGAPVAYPP PPAAAYPAGP YAHAPAAALY PPPPPPPPPH PAAASAAAGQ 60 LGPAAQQQLQ IFWNEQYREI EATTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA 120 CEMFILELTH RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPRDE AKDAEAAAAA 180 GMGAGIPHPG AGMPATDPMG YYYVQPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-57	76	168	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G204100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092473	1e-170	FP092473.1 Phyllostachys edulis cDNA clone: bphyst032d09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973798.1	1e-110	nuclear transcription factor Y subunit C-6, partial
Swissprot	Q9XE33	1e-78	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A0Q3P9D1	1e-104	A0A0Q3P9D1_SETIT; Uncharacterized protein
STRING	Si015032m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-59	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Sevir.6G204100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]