PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G219400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1042aa    MW: 116180 Da    PI: 6.6777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G219400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-2174175199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  Sevir.6G219400.2.p  74 FCKTLTASDTSTHGGFSVPRRAAERIfphldfsM-QPPA-QELQARDLHDSIWTFRHIYRGQPKRHLLTTGWSLFVSGKKLLAGDSVLFIR 162
                         99*****************************954.4444.49************************************************5 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         d   +++l+++++r+
  Sevir.6G219400.2.p 163 D--ARQQLLLGIRRA 175
                         4..566679999987 PP
2Auxin_resp118.74.7e-39200283183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
  Sevir.6G219400.2.p 200 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 283
                         79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4064203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-3867189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-1773163No hitNo description
PfamPF023621.1E-1974175IPR003340B3 DNA binding domain
SMARTSM010191.5E-1974176IPR003340B3 DNA binding domain
PROSITE profilePS5086311.44874176IPR003340B3 DNA binding domain
PfamPF065074.1E-34200283IPR010525Auxin response factor
PfamPF023097.9E-109201008IPR033389AUX/IAA domain
PROSITE profilePS5174527.0029231007IPR000270PB1 domain
SuperFamilySSF542772.62E-89271002No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MGKDADAKIP SYPNLPSKLI CILNSVTMHA DTDTDEVYAR MTLQPVSNVT QCDKETLLAS  60
ELALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PHLDFSMQPP AQELQARDLH  120
DSIWTFRHIY RGQPKRHLLT TGWSLFVSGK KLLAGDSVLF IRDARQQLLL GIRRANRQPV  180
NLSSSVLSSD SMHIGILAAA AHAAANNSQF TVFYNPRASP SEFVIPFAKY QKAVYSNQLS  240
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NIQVAWDEAA PSERRTRVSL  300
WDIEPVIAPF FIYPSPLFTA KRPRQPGITD DETADMENLF KRTMPWFGEE IYKKDLNTQN  360
NLVPGLSLVQ WMQQNPSLTS TVVQPELLNS LAGKPVQTLA AADMSRQISF QPQFLQQNNI  420
QFNTSLLPPQ NQQTEQLAKV IATPNQSGSV IVSQKVVQDC NPEQKQHAIT QPVQGSQPMI  480
SAAQPQFVVQ NQLQQPQVIL QAQPQQPQVI LQAQIQQQQP LVQNHTVLHG DLQQAQLLQQ  540
QEPHLQQQPQ QVQQSVQEQQ QIKIQPVQVL NGTNVITQLS DHQMKIQLLK ALQPQQPLIM  600
EQQKMILDLQ HQMVNSNSQS AAQQCAQVTT QAGGMHSSNT IQYPTQQKTQ PHQPIQDFPR  660
HAVSVANPEI ATSMGTRSLH VPGGVQLLKT EDVPSSSTSP PTNNNPVLLQ SVPCSSKNQS  720
LLTAAKTPQS SAVVGPTLGQ GMKPYESAQQ MVMIPKGAEQ KPVTRQDYVN NTPQMDYLDT  780
SSSATSVCLS QADGSLHQNF PPSSFNQHQL LRETVPDSEF EVTDPGNNFL FGVNIDGHLD  840
SLNADALLAN NFETEKYMDH MPGHGISNYI SSKDSQQELS SSMISHSFGV ADIAFNSIDS  900
SINDAPFLNR NSRPPAPAHQ RIRTYTKVHK RGAVGRSIDI NRYSGYDELK HDVARMFGIE  960
GQLSDQNRGG WKLVYEDHEK DVLLVGDDPW EDFVNCVRCI RILSPQEEMQ MRLASDFGDS  1020
FLHNQACSSS DGGHPWRVTG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-137330490388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G219400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973925.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLK3YFY70.0K3YFY7_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-179auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]