PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G230800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 19938.8 Da    PI: 9.1851
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G230800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.6e-272877251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  Sevir.6G230800.1.p 28 RIEDRTSRQVRFSKRRCGLFKKAYELSVLCDAQVALVVFSPAGRLYEFAS 77
                        8***********************************************86 PP
2K-box15.57e-071271633268
               K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                              + +  ++++Ls+ e+++Le+ + ++l  iR+k
  Sevir.6G230800.1.p 127 NIVAQRAMEASVDELSMAEIRSLEETVTDALAAIRNK 163
                         444455677899***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-321978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.7581979IPR002100Transcription factor, MADS-box
CDDcd002654.78E-352189No hitNo description
PRINTSPR004046.8E-282141IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-282194IPR002100Transcription factor, MADS-box
PfamPF003193.3E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-284156IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-285677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERRVELDLL QQEKKGTKRK RGRVELRRIE DRTSRQVRFS KRRCGLFKKA YELSVLCDAQ  60
VALVVFSPAG RLYEFASADS SLGEVLDRYW DLANTINDLN IEARDSRVDR NIQEQQSFVG  120
SLPDQLNIVA QRAMEASVDE LSMAEIRSLE ETVTDALAAI RNKLRAKVVG LLPQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-1821114386Myocyte-specific enhancer factor 2B
1tqe_Q1e-1821114386Myocyte-specific enhancer factor 2B
1tqe_R1e-1821114386Myocyte-specific enhancer factor 2B
1tqe_S1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_A1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_B1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_C1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_D1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_E1e-1821114386Myocyte-specific enhancer factor 2B
6c9l_F1e-1821114386Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G230800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974004.11e-122MADS-box transcription factor 51
RefseqXP_012702155.11e-122MADS-box transcription factor 51
TrEMBLA0A368RP961e-120A0A368RP96_SETIT; Uncharacterized protein
STRINGSi014540m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-31AGAMOUS-like 14