PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G237500.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 377aa MW: 39748.5 Da PI: 6.4466

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G237500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.7	3e-09	195	253	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i+eLe+kv+ ++ e ++L+ +l l+ a l++e+ Sevir.6G237500.1.p 195 KKAKRIINNRQSAARSKERKMRYIAELERKVQFMQREATTLATQLALLQRDTAGLTAEN 253 89**********************************************99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-14	191	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	193	256	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-10	195	249	No hit	No description
Pfam	PF00170	1.1E-7	195	249	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.59E-10	195	247	No hit	No description
CDD	cd14703	9.87E-23	196	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNMDTTPIAG GGGGGGDAEG GGGCAAGNVP AMQSSCDAVA PSPAPHTECD MSRMPDSPVR 60 KPGHRRALSD IIGLPNDLDL GAPGAGDGPA LSEENEEELF SMFLDVEKLN SRCGASESES 120 SCAMAGGGGE ATQMSAAPGA GLRPRHHQRH SMDASSSIDA ENLFGTSAMN GVSPVEAKKA 180 MSAAKLAELA LIDPKKAKRI INNRQSAARS KERKMRYIAE LERKVQFMQR EATTLATQLA 240 LLQRDTAGLT AENGELKLRL QNTEHQVHLQ DALNDALKSE LQRLKMATGQ MGSGGGAMNF 300 GASPHPFGSN HHHQQMFHPN QAMPPPFAAM QQQQLLPNQP LHPLQTQQAA INLNMKGPAP 360 APNQWWGDAW SESSSS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNMDTTPIAG GGGGGGDAEG GGGCAAGNVP AMQSSCDAVA PSPAPHTECD MSRMPDSPVR  60
KPGHRRALSD IIGLPNDLDL GAPGAGDGPA LSEENEEELF SMFLDVEKLN SRCGASESES  120
SCAMAGGGGE ATQMSAAPGA GLRPRHHQRH SMDASSSIDA ENLFGTSAMN GVSPVEAKKA  180
MSAAKLAELA LIDPKKAKRI INNRQSAARS KERKMRYIAE LERKVQFMQR EATTLATQLA  240
LLQRDTAGLT AENGELKLRL QNTEHQVHLQ DALNDALKSE LQRLKMATGQ MGSGGGAMNF  300
GASPHPFGSN HHHQQMFHPN QAMPPPFAAM QQQQLLPNQP LHPLQTQQAA INLNMKGPAP  360
APNQWWGDAW SESSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G237500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974066.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	1e-106	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	K3YMV4	0.0	K3YMV4_SETIT; Uncharacterized protein
STRING	Si015587m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-68	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G237500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]