PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G238800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 430aa MW: 46999.3 Da PI: 7.2549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G238800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	109	137	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Sevir.6G238800.1.p 109 KTVRRLAQNREAARKSRLRKKAYIQQLES 137 5679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-5	105	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	107	151	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-8	107	149	No hit	No description
CDD	cd14708	6.48E-21	109	161	No hit	No description
SuperFamily	SSF57959	4.9E-7	109	142	No hit	No description
Pfam	PF00170	1.2E-8	109	138	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	112	127	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-28	189	262	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
METPSPFPLL LLLLATAAAR PPSTLDIFPA WPMTMRSVHT PKEGSNLTVD NTDDSKSSSK 60 NTNNHSSDHQ LGAAAANMAS QFDQVPQQIQ HKDMATGSTP KTGKALDPKT VRRLAQNREA 120 ARKSRLRKKA YIQQLESSKL KLAQMEQDVQ RARSQGLFLG GGPGANTSSG AAMFDVGYAR 180 WLDDHGRRMA ELQGALHSHL PDGDLRAIVD DTLTHHDELF QLKVVAAKSD VSHLINGAWT 240 TPAERCFLWM GGFRPSDLLK TLLPQLDPLT EQQVVGICNL QRSSQEAEEA LSQGLEQLHQ 300 SLADTMAGGS LIDDINMSFM GQMALALGKL ANLEGFVIQA DNLRQQALHQ MHRILTVRQA 360 ARCFLAIGEY HNRLRALSSL WASRPREMLV ADEGNCGEIS VATQPSQSQF SSLLTHAVEL 420 TFSLGAREK*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

METPSPFPLL LLLLATAAAR PPSTLDIFPA WPMTMRSVHT PKEGSNLTVD NTDDSKSSSK  60
NTNNHSSDHQ LGAAAANMAS QFDQVPQQIQ HKDMATGSTP KTGKALDPKT VRRLAQNREA  120
ARKSRLRKKA YIQQLESSKL KLAQMEQDVQ RARSQGLFLG GGPGANTSSG AAMFDVGYAR  180
WLDDHGRRMA ELQGALHSHL PDGDLRAIVD DTLTHHDELF QLKVVAAKSD VSHLINGAWT  240
TPAERCFLWM GGFRPSDLLK TLLPQLDPLT EQQVVGICNL QRSSQEAEEA LSQGLEQLHQ  300
SLADTMAGGS LIDDINMSFM GQMALALGKL ANLEGFVIQA DNLRQQALHQ MHRILTVRQA  360
ARCFLAIGEY HNRLRALSSL WASRPREMLV ADEGNCGEIS VATQPSQSQF SSLLTHAVEL  420
TFSLGAREK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G238800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683425.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A368RPK7	0.0	A0A368RPK7_SETIT; Uncharacterized protein
STRING	Si014861m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-138	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G238800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]