PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G239900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 287aa    MW: 30798.4 Da    PI: 11.4071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G239900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10124168554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h e Er RRd++  ++ eLr  +P+       +++Ka+iL  A+ YI +L
  Sevir.6G239900.1.p 124 HVEDERHRRDKLHRRLCELRAAVPNV-----SRMDKASILADATAYITEL 168
                         7889*********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.126119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-7123173No hitNo description
SuperFamilySSF474592.49E-14123190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13124183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8124168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MPSKSKCCDV ATCRCYHLDL SLPPAPEPPA TARSAIFSTV QWMGSSSPPP PAALPPRPPS  60
PPPATTRRSS SPHARSWGKG GPVTSGCMSP WMARRGATGA RPRWTTTRGR KAGPARPDEP  120
AIPHVEDERH RRDKLHRRLC ELRAAVPNVS RMDKASILAD ATAYITELRG RVEQLEAMAR  180
EAAARQGAPS AASHSFRNLE AEKLEVRMVG PKAAALRLTT AAARHRHAPA RLMDALRSLD  240
LPVRHASICR VAGVTVQDAV VDVPTAALRD EGGLRAVLLH RLQVSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-15119177462Transcription factor MYC2
5gnj_B8e-15119177462Transcription factor MYC2
5gnj_E8e-15119177462Transcription factor MYC2
5gnj_F8e-15119177462Transcription factor MYC2
5gnj_G8e-15119177462Transcription factor MYC2
5gnj_I8e-15119177462Transcription factor MYC2
5gnj_M8e-15119177462Transcription factor MYC2
5gnj_N8e-15119177462Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G239900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702440.23e-96LOW QUALITY PROTEIN: transcription factor MYC2
TrEMBLA0A368RPJ11e-146A0A368RPJ1_SETIT; Uncharacterized protein
STRINGSi015213m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-19bHLH family protein