PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G240000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 229aa    MW: 24418 Da    PI: 10.6563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-1080125454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h  +Er+RRd++   f eLr   P+       +++Ka+iL  A+ YI +L
  Sevir.6G240000.1.p  80 SHVDAERQRRDKLYRLFCELRAAAPTV-----SRMDKASILADATAYIAEL 125
                         7999**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-1474141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6376125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1280137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-980130No hitNo description
PfamPF000108.6E-880125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-782131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGLSSPPPPA GLPPRRPPSP LPATTRCSSS PHARSWGNGG RVTSGCMSPW VAPRRATGAR  60
ARWIRGRKPG APRTDEPAIS HVDAERQRRD KLYRLFCELR AAAPTVSRMD KASILADATA  120
YIAELRGRVE QLEAKARDAV ARHGAPPSTP AMTTASHSFS SLEDEGKLEV RMVGPEAAAR  180
HAPARLMDAL LSLDLPVRHA CICRVGGVTV QDAVVDVHRA LLDCHGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1575135463Transcription factor MYC2
5gnj_B5e-1575135463Transcription factor MYC2
5gnj_E5e-1575135463Transcription factor MYC2
5gnj_F5e-1575135463Transcription factor MYC2
5gnj_G5e-1575135463Transcription factor MYC2
5gnj_I5e-1575135463Transcription factor MYC2
5gnj_M5e-1575135463Transcription factor MYC2
5gnj_N5e-1575135463Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0973414e-51FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683541.11e-105transcription factor MYC2-like
TrEMBLA0A368RPV71e-105A0A368RPV7_SETIT; Uncharacterized protein
STRINGSb07g025310.11e-55(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-27bHLH family protein