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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sevir.6G240200.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | bHLH | ||||||||
| Protein Properties | Length: 262aa MW: 28026.4 Da PI: 5.6086 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 21.6 | 4e-07 | 96 | 139 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RRd +f eLr +P+ + +Ka+ L A YI +L
Sevir.6G240200.1.p 96 SHVEAERQRRDX--RRFCELRAAVPTV-----SRFDKASLLSDAATYITQL 139
799********7..99**********6.....49***************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.62E-11 | 86 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 9.458 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.88E-8 | 95 | 144 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 5.7E-10 | 96 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.2E-4 | 96 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.4E-4 | 98 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 262 aa Download sequence Send to blast |
MDELVCPASS SSSPSSASFF STAGHHQELE FMPCDVLEGL LGDEDWIDEA PDGVTLGYEG 60 SSARSPGNDL PGEPPAPEPK RRGRRPGPRS DAPVLSHVEA ERQRRDXRRF CELRAAVPTV 120 SRFDKASLLS DAATYITQLR DRVKQLEAET RRAAMTSAAA AAPAMAATSS LGVQAEELEL 180 EVRMVGGEAA ALRLTTAVRH RHAPARFMLA LRSLDLPVQH ACVCLVGGAT VQDAVVDVPA 240 GLRDEHGLRA ALLHMLQQTG W* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sevir.6G240200.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004974090.1 | 1e-143 | transcription factor bHLH14 | ||||
| TrEMBL | K3YLE9 | 1e-141 | K3YLE9_SETIT; Uncharacterized protein | ||||
| STRING | Si015072m | 1e-142 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP893 | 33 | 130 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G17880.1 | 3e-21 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sevir.6G240200.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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