PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G240400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 258aa    MW: 27226.7 Da    PI: 5.7045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G240400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1298143454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Sevir.6G240400.1.p  98 SHVEAERQRRDKLNRRFCELRGAVPTV-----SRMDKASLLADAAAYIAEL 143
                         799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.88194143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1697162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1698158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-1098143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-1198148No hitNo description
SMARTSM003532.1E-11100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDELVSSSSS PSTAPIFSPA GNLLELDFVS CDVPDQWMGG QDWLDEPLDL DGAAWADEAG  60
SGGSASAGNA DVSGEPPPAP KRQRGRKPGP RTNGPVISHV EAERQRRDKL NRRFCELRGA  120
VPTVSRMDKA SLLADAAAYI AELRDRVEQL EAEAKQASAA TTVAAAAHPF AGGGLEENLE  180
VRMLGREAAA LRLTSAARHA PARLMLALRS LDLAVQHACV CRVGSTTVQD AVVDVPAALR  240
DERGLRAALL HKLQRSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1897156766Transcription factor MYC2
5gnj_B2e-1897156766Transcription factor MYC2
5gnj_E2e-1897156766Transcription factor MYC2
5gnj_F2e-1897156766Transcription factor MYC2
5gnj_G2e-1897156766Transcription factor MYC2
5gnj_I2e-1897156766Transcription factor MYC2
5gnj_M2e-1897156766Transcription factor MYC2
5gnj_N2e-1897156766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G240400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406791e-142BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974088.10.0transcription factor bHLH14
TrEMBLA0A368RPQ10.0A0A368RPQ1_SETIT; Uncharacterized protein
STRINGSi015343m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-16bHLH family protein