PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G245200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 205aa MW: 22051.1 Da PI: 10.4981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G245200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00061	138	175	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R ++ +++ L +l+P + +Kl + Le+Av+Y+ Lq Sevir.6G245200.1.p 138 RGKVQERLRVLGRLVPGC-----QKLPAPDLLEEAVDYVAALQ 175 567778888999999999.....8***************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.179	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-7	131	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-5	133	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEVDDAAAAG GILSDLAGEE AIERLQADAA RENVGHLPVN VEYEGARGAA HKIYGRRLLD 60 ALRATGGGQP RAVKAATDSA LALTTRGQTR WSCAILLAGA ACSRRHVLVK AGGKIRRRHR 120 RPNKSSKAAS FSQEEEGRGK VQERLRVLGR LVPGCQKLPA PDLLEEAVDY VAALQMLRAR 180 TSDTCPSTSS TREQGARMWA RMQW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G245200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967126.1	1e-106	transcription factor bHLH150-like
TrEMBL	A0A368QZZ8	2e-78	A0A368QZZ8_SETIT; Uncharacterized protein
STRING	Pavir.Ia00876.1.p	3e-61	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1658	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	3e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G245200.1.p