PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G002800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 151aa MW: 17435.4 Da PI: 10.7627

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G002800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	22	71	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpik+A+k L++++++LK +CRqyGI+RWPhRkiksl Sevir.7G002800.1.p 22 DSITLVNIAQYFHLPIKEASKALKIGVSALKTKCRQYGIPRWPHRKIKSL 71 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.769	6	91	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-22	24	71	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MVYAELAPPV QKQPRANRKR VDSITLVNIA QYFHLPIKEA SKALKIGVSA LKTKCRQYGI 60 PRWPHRKIKS LDSLIHDLEY VLTTEDGHQD EWLQNKNAAA IKALKEKKKL LESEKEAIRQ 120 KPALDLRTET KLFRQLVFKR KNNARLKVKD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G002800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012702814.1	1e-106	protein RKD5
TrEMBL	K3YEI3	1e-105	K3YEI3_SETIT; Uncharacterized protein
STRING	Si012648m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-25	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.7G002800.1.p