PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020600.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 686aa    MW: 80084.6 Da    PI: 5.7473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.2e-1782162290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y++ +GF v k +++k+       k t++C+k+ k++e++ + +++r++++ +rtgC  +++vk+  +g+we++ +++eHnH+l+
  Sevir.7G020600.4.p  82 FVNVYGQVTGFVVYKGRNYKH------RKITLQCNKSKKAKENEMR-QRKRKRNTIERTGCPMRVTVKLV-EGRWEIMAVQNEHNHPLS 162
                         7799***************99......5678***********9999.99*********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1582162IPR004330FAR1 DNA binding domain
PfamPF105511.8E-23286378IPR018289MULE transposase domain
PROSITE profilePS509669.458569605IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MLSEIQTADA DEAFIQELEQ ENGNPILNDE PDDDLNECQE DTAEVEVDCD EDYFFPSPDE  60
VEQARPPEVG MVFATLDDAQ RFVNVYGQVT GFVVYKGRNY KHRKITLQCN KSKKAKENEM  120
RQRKRKRNTI ERTGCPMRVT VKLVEGRWEI MAVQNEHNHP LSSSPSLTRF FLSHKYMSEE  180
EKNFSRILQE SKIKPAKIME VFWRLRRKFK NIPVQKMAVN NLEQSDRLMK IENTDIESTL  240
EHVRRLQKEQ PGFYYAIKTD GDNTVRSIFW TDAQARLDYA LYGDFISFDT SYSTIEYNML  300
FALLIGMNGH GKATVFGWAL LEDERAETFS WLFRTFLDVM DGKKPSTILT HQDSAITKSI  360
AEVFHTAFHR FDMWHVLRKA RDELGSFMAH RGGMETELTH LVSNSVATEE FENGWQAMLE  420
KYDAASNAHL DLMYQTRLMW VPVYFKHVFS PFTQSTGCSK SKHSIFKDYV QQNDTIETFI  480
SQYDIFQEEA VSIEDGDRSQ STLKKPVYST RHPIERHAAE IYTTGMFLRF QKELLDASAF  540
NAFEKERDVI YTVKKALDYE DAEFLRDSFS VDVDLKTNTF NCICSKFERD GIVCCHVLRL  600
FTQFSINMIP EHYIKPRWTK KFREQELQKY CSEKIGSDIS QSSLRYAMIM NRMAESCAAV  660
SKDPNQSKIF LEEHERILWK LTDRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684165.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Y5L30.0K3Y5L3_SETIT; Uncharacterized protein
STRINGSi009501m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-84FAR1-related sequence 5