PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 647aa    MW: 74850.4 Da    PI: 6.1914
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.3e-1881161290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.5.p  81 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 161
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1581161IPR004330FAR1 DNA binding domain
PfamPF105514.6E-24285380IPR018289MULE transposase domain
PROSITE profilePS509669.569571607IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVAEEGPEAA VTSAQDPEQD GGDHVSNDEE NDDFKGCQKD RTEAEVDGDE DYFFPSVEDV  60
EKARPPEVGM VFPTLQDAHR FLNVYGLLTG FVVKKGCNYK HKKITFVCNK SSKMKVTETG  120
QKKRRSNAIE KTGCRMKVLV KLVEGRWEIK TVVNEHNHPL MSSPSLSTFF ISHKYMSEEE  180
RIFSRILQES KIKPSQIMEI FKKLRSRLKH IPVRKMDANS LKQSDSQMEI RNTDIEITLE  240
HVRRFQMEQP GFFYAIKTDD RNTVRSIFWT DARARLDYAL YGDFISFDTS YTTREHNMLF  300
APLIGINGHG KAIVFGWGLL ENEMADKADT FSWLLRTFLD VMDGKKPTTI ITDQGSAMTK  360
SIAEVFPTVF HRFSMWHVMR KAREIFEDFM ENGPVMEADL TCLIANCLTI EEFEDGWKTM  420
LEKYDAPPNE DLNLMYQTRL MWVPVYFKHA FCPFIRSTGR SESTDTIFKE HGLRKDAIEN  480
FFCQYDIFQK NVISPEDGYG LESTQKKTMY CTRQPIERHA AEVYTMGMFL KFQKELLDAS  540
AFNVFEIESG RVYAVKKTLD YEEAEFPGDS FSVEVDLGNN MFNCICSKFE RDGMLCCHVL  600
RLLTQFGVNV IPENYIRQRW TKKFREELQK LHGTEKTRST VSQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975156.10.0protein FAR1-RELATED SEQUENCE 5 isoform X5
TrEMBLA0A368RRF00.0A0A368RRF0_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-80FAR1-related sequence 5