PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G022600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 173aa MW: 17864.2 Da PI: 9.0551

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G022600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.1	9.3e-32	58	125	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Sevir.7G022600.1.p 58 RSSADRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 125 5788********************************************************77777333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-27	59	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.47	60	114	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSSSSELVLY NLVPAPQTLN PPPPHAPAAA VSGDLTISTA VAAPPQEPLR GRARRPARSS 60 ADRHAKVAGR GRRVRIPAMV AARVFQLTRE LGHRTDGETI EWLLRQAEPS IIAATGTGVT 120 PEEAPSALVP VSPAAATASL MHVPYYTALL MQPPPTADSA SGSGAAAEEN NN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G022600.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975168.1	1e-118	transcription factor PCF1-like
Swissprot	O23875	5e-56	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6Q550	5e-98	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	GRMZM2G096610_P01	3e-86	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G022600.1.p