PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G030400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 258aa MW: 27543.5 Da PI: 6.314

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G030400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	44.5	4.2e-14	44	139	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 f r+wse De+ +L Gl ++a++g+ p ++a ++ +++++ +++ eK+rrL+ K+ + ++ e + ++ +el Sevir.7G030400.1.p 44 FVRVWSEADEVRILEGLAAYAADHGAPPARsQLHAAL-EGRSLDKAEFTVTEIYEKVRRLRTKYCNLRDAgGPPVPEGGEDGGDEVRKYEL 133 89*********************988773444444.4566778999**************9999544455555667778889* PP DUF573 92 skkiWg 97 sk iWg Sevir.7G030400.1.p 134 SKAIWG 139 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-18	44	139	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MNRPPHSSRT ADLVSPAADA AVEEAPMAAS KPAAGARKKP SVAFVRVWSE ADEVRILEGL 60 AAYAADHGAP PARSQLHAAL EGRSLDKAEF TVTEIYEKVR RLRTKYCNLR DAGGPPVPEG 120 GEDGGDEVRK YELSKAIWGD QPANVAKKGG STSAAAVAVL PKAGGAIPRV RRGLEELQGL 180 FPCLAAEVEK VTNDEMLAPV LKRAFEFIDD QKAGELDDKV KKQMVKEAQV TMSGAALRDE 240 VLKMLIRSME IDMASVV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G030400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974990.1	0.0	probable transcription factor At1g61730
TrEMBL	A0A368RQY1	0.0	A0A368RQY1_SETIT; Uncharacterized protein
STRING	Si012600m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14621	9	9

Link Out ? help Back to Top
Phytozome	Sevir.7G030400.1.p