PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G039100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 192aa    MW: 21108.9 Da    PI: 6.4087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G039100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.5e-0974111142
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeA 42 
                         s+y+ V+w++ +g+W+AeIr        +  r +l  f t e+A
  Sevir.7G039100.1.p  74 SKYHDVWWRP-WGKWAAEIRNpH-----CtMRKWLDIFNTIEDA 111
                         78999*****.**********44.....579*********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-974114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-1075111IPR001471AP2/ERF domain
PROSITE profilePS5103210.44175111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MILQKDPQTL LQLTIEAPVA CTCATCGADG CAGSGCELLA AARTGPSSDS DEEGSSPRPR  60
AMPPLPGAWR GRVSKYHDVW WRPWGKWAAE IRNPHCTMRK WLDIFNTIED AIPSMAPTST  120
YHRHHHLLQP LLESLHETYR SNASSPVHVA LAVAALVGQH STRLVPKEQD IWDGLNETMM  180
MDDGSFWSSI P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G039100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.13e-63ethylene-responsive transcription factor ERF112
TrEMBLK3YV488e-62K3YV48_SETIT; Uncharacterized protein
STRINGSi018144m1e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-11ethylene-responsive element binding protein