PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G044000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 483aa    MW: 52194.1 Da    PI: 6.0673
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G044000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.21.9e-25200265171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Sevir.7G044000.1.p 200 RYDNSLSLLTKKFINLLQGAENGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 265
                         689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-27198266IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-16200263IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-32200265IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-23202265IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.69E-33277389No hitNo description
SuperFamilySSF1440745.23E-23277388No hitNo description
PfamPF164211.9E-23281386IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDGGSSSLPL PQPPPPPQVY LRRPVPPVPA PPRVHLFRAP APIPIFSSRP RGGAGPPIPP  60
PAAPAPSPAP APPPQAAAAP APPRPPPAAP VSKDMPPPRP PQQQAGSMLP PPAPKAAGKG  120
MPMPNSQPNE QKNGGENSQA EINMGETTQG HDKDTTSEPA KVIKRVKKLK VSKHSTGTAD  180
GSGAVEGDSG PSLHSIYHCR YDNSLSLLTK KFINLLQGAE NGTLDLNKAA ETLEVQKRRI  240
YDITNVLEGV DLIEKGLKNM IRWKGFDMSK PKEIECQISS LKEELESLYD EEFRLDDEIR  300
EARDKLQALT LDEDKRKFLY LSKEDINKIP HFQGSTLIAV NGPHGTCVEV LDPNADLYLY  360
GNLGLQEKHY KIVLRSSMGP IDCYLISDHQ EILNPDQQVA SDKLEPVVAA GSSQAVQEMD  420
CDPNQTPEKG HSNAVCTHAS ELSRKHEIMS GILRIVPSHS DANSDYWLAS DVDASMTDAW  480
GT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-21200265773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G044000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.10.0transcription factor E2FC
TrEMBLA0A368RQY50.0A0A368RQY5_SETIT; Uncharacterized protein
STRINGGRMZM2G050590_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-79E2F transcription factor 1