PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G050200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 299aa    MW: 32326.4 Da    PI: 5.2482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G050200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1389132755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI++Lq
  Sevir.7G050200.1.p  89 VMERHRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIQQLQ 132
                         58*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1785147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1688137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1689148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1489136No hitNo description
PfamPF000102.1E-1190132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEAADLLTLG FDFCFQSPPR FFDEPYEHDL AVVDSIVLHA PAEAESVTGL YPSNNREASS  60
SSDGANSSCN TQVPPASSPA GGAANKSMVM ERHRRRRLNE KLYALRSVVP NITKMDKASI  120
VRDAIAYIQQ LQEEERRVLA EVSALESSSD TAATVKTEDH AAAGDADSYP RRTKRTRTAA  180
ADGGSVTLSV DDASPPVQIL EVVVSEAGEK MAVVSVRCSR GRDAVAKVCR ALEPLRLRVV  240
TASIAAAGDA FVHTMFVEFG LWTNITTEAW EERRVVFHEL YGGLIDRTGS LLAGWRLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G050200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610233e-49EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975233.10.0transcription factor bHLH35
TrEMBLK3Y9440.0K3Y944_SETIT; Uncharacterized protein
STRINGSi010736m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.45e-38bHLH family protein