PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G050200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 207aa    MW: 22688.8 Da    PI: 7.6285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G050200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-14345855
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI++Lq
  Sevir.7G050200.2.p  3 MERHRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIQQLQ 45
                        8*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003532.8E-16150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.164144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-13249No hitNo description
SuperFamilySSF474591.7E-16260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.24E-5123195No hitNo description
Gene3DG3DSA:3.30.70.2603.9E-5136194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVMERHRRRR LNEKLYALRS VVPNITKMDK ASIVRDAIAY IQQLQEEERR VLAEVSALES  60
SSDTAATVKT EDHAAAGDAD SYPRRTKRTR TAAADGGSVT LSVDDASPPV QILEVVVSEA  120
GEKMAVVSVR CSRGRDAVAK VCRALEPLRL RVVTASIAAA GDAFVHTMFV EIEEMSGAQL  180
KETIEAALAH LDVTRHSLKT KRYWED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G050200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610238e-49EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975233.11e-146transcription factor bHLH35
TrEMBLA0A368RSA21e-145A0A368RSA2_SETIT; Uncharacterized protein
TrEMBLK3Y9441e-144K3Y944_SETIT; Uncharacterized protein
STRINGSi010736m1e-145(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-39bHLH family protein