PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G050400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 278aa    MW: 30443.5 Da    PI: 4.5345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G050400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-1376121555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Sevir.7G050400.2.p  76 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 121
                         5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.92971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1775135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-1375125No hitNo description
PfamPF000106.0E-1176121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1777135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1577126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEMGDSFEYY WEMQRLIESE ELSMYLGAQD DALSCYDSSS PDGSMSNSSW APAVTVTAAD  60
DDKAAGGAGA AGANKNIIME RDRRRKLNEK LYALRSVVPN ITKMDKASII KDAIEYIEQL  120
QAEERRMLQE VRALEPAGGS DEERYEYDEG LLLQAERTKK MRRARSVPSI AADGAAPPPP  180
APVEVLELRV SEVGERVLVV SVTCGKGRDA MARVCRAVEE LRLRVITASI TSVAGCLMHT  240
IFVEVDQGDR IEMKHTIEAA LTQLDTTTGS PPSVMSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G050400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697841e-108EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279671e-108KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975236.10.0transcription factor bHLH35
TrEMBLA0A368RS580.0A0A368RS58_SETIT; Uncharacterized protein
STRINGSi010413m1e-147(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-51bHLH family protein