PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G050400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 262aa    MW: 28314.2 Da    PI: 4.9584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G050400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1360105555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Sevir.7G050400.3.p  60 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 105
                         5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.92955104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1759119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-1359109No hitNo description
PfamPF000105.4E-1160105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1761119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPLHCSSMYL GAQDDALSCY DSSSPDGSMS NSSWAPAVTV TAADDDKAAG GAGAAGANKN  60
IIMERDRRRK LNEKLYALRS VVPNITKMDK ASIIKDAIEY IEQLQAEERR MLQEVRALEP  120
AGGSDEERYE YDEGLLLQAE RTKKMRRARS VPSIAADGAA PPPPAPVEVL ELRVSEVGER  180
VLVVSVTCGK GRDAMARVCR AVEELRLRVI TASITSVAGC LMHTIFVEVD QGDRIEMKHT  240
IEAALTQLDT TTGSPPSVMS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G050400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697844e-94EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279674e-94KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975236.10.0transcription factor bHLH35
TrEMBLA0A368RRU90.0A0A368RRU9_SETIT; Uncharacterized protein
STRINGSi010413m1e-131(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-51bHLH family protein