PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G059800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 377aa    MW: 41828.3 Da    PI: 8.166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G059800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.56.4e-101781699
                        EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 16 lvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +++p + ae +g       + ++  +sg   ++W+v++   + +++ +l++GW e + a g+++g f+v++++g  ++ l++k+f++
  Sevir.7G059800.1.p  1 MRIPDELAEGIGAG-----EARVVGPSGgkvKVWRVEV--GRDGDGAFLGRGWPEIAAAFGVRDGWFLVLRHHG--GGVLTLKAFDA 78
                        56888888877644.....588999999999*******..999999*************************765..67678888876 PP
2B331.53.2e-1088175898
                         -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         + ++k+g   +p kf+e++  +++++s++ ++  + g+  +v+l  + + +  +l++GW++   ++++ +   +++k++g++ f  +vkvf
  Sevir.7G059800.1.p  88 PPTGKKGFRLIPAKFVEHYiPEEHKNSRMAMVIGSLGKICRVEL--EMNESNLFLRGGWSQVLVSHDVTQANALLLKYEGNMVF--TVKVF 174
                         6678888899******999*555568889***************..999999******************************99..88887 PP

                         - CS
                  B3  98 r 98 
                          
  Sevir.7G059800.1.p 175 G 175
                         5 PP
3B3474.7e-152142831686
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                          +l+k+f++++g+ +++++tl+    s +sW+v      + +  +v+ +GW  F+++n LkegD+++F  ++
  Sevir.7G059800.1.p 214 ESLSKSFCDAIGLLEPCTITLKTSMNSTESWKVGG--LPCMNNsFVIVRGWMMFCQENSLKEGDICTFNIVE 283
                         5899**********99988888888999*******..44444449***********************9654 PP
4B348.81.2e-152923651386
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         +++ +lp  f++++g+ +++++tl+   +s rsW+v +  +k+s++yv +  Wk+F+++n++k+gD+++++ ++
  Sevir.7G059800.1.p 292 THNKYLPYAFCDAIGLREPRTITLKTSMSSTRSWQVLVVPNKNSSHYVRGLDWKRFCEENEIKVGDVCTISIVE 365
                         45689************88877777777888*******99*****************************99654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.06179IPR003340B3 DNA binding domain
CDDcd100172.62E-6177No hitNo description
PROSITE profilePS508639.686179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-9181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-91581IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.71381177IPR003340B3 DNA binding domain
SMARTSM010196.8E-682177IPR003340B3 DNA binding domain
CDDcd100171.17E-787174No hitNo description
SuperFamilySSF1019369.42E-1294178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-1197177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743199295IPR003340B3 DNA binding domain
SMARTSM010190.12204285IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14207293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-14212293IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-9215279No hitNo description
SMARTSM010190.0035286376IPR003340B3 DNA binding domain
CDDcd100171.13E-10288361No hitNo description
PfamPF023621.1E-13289365IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-14293375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-13296375IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.11297376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRIPDELAEG IGAGEARVVG PSGGKVKVWR VEVGRDGDGA FLGRGWPEIA AAFGVRDGWF  60
LVLRHHGGGV LTLKAFDASG CIRGLGTPPT GKKGFRLIPA KFVEHYIPEE HKNSRMAMVI  120
GSLGKICRVE LEMNESNLFL RGGWSQVLVS HDVTQANALL LKYEGNMVFT VKVFGPDGFQ  180
RESKDKDIRI QQREQKINPS MVVFESVSSG YKCESLSKSF CDAIGLLEPC TITLKTSMNS  240
TESWKVGGLP CMNNSFVIVR GWMMFCQENS LKEGDICTFN IVETTLWHVV ITHNKYLPYA  300
FCDAIGLREP RTITLKTSMS STRSWQVLVV PNKNSSHYVR GLDWKRFCEE NEIKVGDVCT  360
ISIVETTLWH VVVACQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G059800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977884.11e-135putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RS540.0A0A368RS54_SETIT; Uncharacterized protein (Fragment)
STRINGPavir.Gb02309.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-17B3 family protein