PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G060200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 124aa    MW: 12730.5 Da    PI: 8.7752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G060200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-11231031299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + + l++p + a e+g  +     +++   +g++ +v++   + +g+ +l++GW eF+ a g+ +g +vv++++g  ++ l+vk+f++
  Sevir.7G060200.1.p  23 SDDSLRIPDELAGEIGAGE---AHVVVPFGQGKVRRVEV--GRDGGGAFLGRGWPEFATACGVGAGWIVVLRHHG--GGVLTVKAFDA 103
                         567899******9997554...4599999**********..99*99**************************755..77789*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.005715104IPR003340B3 DNA binding domain
PfamPF023623.3E-923103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1125105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1125105IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASSGSHAAA AARKHLRVLL PFSDDSLRIP DELAGEIGAG EAHVVVPFGQ GKVRRVEVGR  60
DGGGAFLGRG WPEFATACGV GAGWIVVLRH HGGGVLTVKA FDASCYLREL GTPPAVPYRG  120
TAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G060200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.18e-46putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS742e-22Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PYC66e-53A0A3L6PYC6_PANMI; 40S ribosomal protein S27
TrEMBLK3YD394e-57K3YD39_SETIT; Uncharacterized protein
STRINGSi012142m6e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187