PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G061000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 117aa    MW: 12945.2 Da    PI: 8.614
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G061000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1622105186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         ++k++++  + k + +++p  f++++g+ +++++tl+   +s  sW+v++    k+ ++  ++GWk+F+++n +kegD ++F +++
  Sevir.7G061000.1.p  22 WLKKEISTRMIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENLIKEGDLCTFNVIE 105
                         67888888888888.9*************99987777777889*******.3444445999*********************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-1523115IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-1423105IPR003340B3 DNA binding domain
SMARTSM010190.008823116IPR003340B3 DNA binding domain
PROSITE profilePS5086310.51836116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1636115IPR015300DNA-binding pseudobarrel domain
CDDcd100179.45E-866101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MASLKNASSR AQGVYVIGPP AWLKKEISTR MIKICISFPA AFCNAIGLRE ACTVTLKTSL  60
SSTSSWQVRV LPYKDTSHQV GSGWKSFCEE NLIKEGDLCT FNVIEMMLWH VIIDRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G061000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.13e-65putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RSH36e-81A0A368RSH3_SETIT; Uncharacterized protein
TrEMBLK3YDR86e-78K3YDR8_SETIT; Uncharacterized protein
STRINGSi012375m1e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.13e-06B3 family protein