PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G061100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 210aa    MW: 24697.7 Da    PI: 11.406
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G061100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.1e-103811594
                        -EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3 15 rlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                         + +p kf+e+h   ++    ++t ++  +sg+++++kl  + +  ++++++GW++F k +++ e   ++++++g++ f+l+v
  Sevir.7G061100.1.p  3 KMLIPAKFVEQHipmELL--DNRTAIVFGPSGKVYSIKL--KMGWAGVFFAGGWSQFLKFHDITEANALLLRYEGNMVFTLKV 81
                        589*********976333..5669999************..888888********************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.35185IPR003340B3 DNA binding domain
SMARTSM010190.0065185IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-13386IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-7381IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12386IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-9382No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEKMLIPAKF VEQHIPMELL DNRTAIVFGP SGKVYSIKLK MGWAGVFFAG GWSQFLKFHD  60
ITEANALLLR YEGNMVFTLK VYGPNGYQRE FNHKENRAMD YQHCQILKSS RKHHLLPFRS  120
SKKQHLLPFR SSREHHLLPF RSSRKHHLLP FRSSREHQLL PFGSSRKHNL LPFRSSMTTI  180
CQAVMEKRNH KAPQHLGTRH HLRSRHHHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G061100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.12e-62putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RSH71e-119A0A368RSH7_SETIT; Uncharacterized protein
STRINGSi003241m1e-76(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-08B3 family protein