PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G061200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 140aa    MW: 14561.9 Da    PI: 9.5203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G061200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.3e-10251051298
                         HTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++  l++p + a e+g       +  +  + g   + W+v++   k +++ +l++GW eF++a g+ +g  +v+++ g  ++ l  k+f+
  Sevir.7G061200.1.p  25 SREALRIPDELAGEIGAA-----EALVVGPAGgkvKFWSVEV--GKDGDGAFLGRGWPEFAEACGVGTGWLLVLRHRG--RGVLSAKAFD 105
                         566799999999888755.....46666777768899*****..9******************************755..4545666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023628.8E-825105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-1026109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-928109IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MASSGPGKQG TATAKKHLRV LLPFSREALR IPDELAGEIG AAEALVVGPA GGKVKFWSVE  60
VGKDGDGAFL GRGWPEFAEA CGVGTGWLLV LRHRGRGVLS AKAFDATCCF RELGAPAPPA  120
KDPPISHWSP CMSQKLIRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G061200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.11e-74putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS757e-23Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLK3YDR85e-83K3YDR8_SETIT; Uncharacterized protein
STRINGSi012375m8e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187